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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62115343_62132303_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62115343 - 62132303
Intron Length:
16961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GGTGTTTTAACA
Flanking Amino Acid:
YVTITLDLQQIFQIAYVIVK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
65.5
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
31
-2.2
3.5
43.4
44.3
Minor BPS
64
0.43
1.4
68.06
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012467
62110304 - 62327611
217308
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000041524
62110286 - 62273607
163322
ENSAPLT00000034236
62110168 - 62277304
167137