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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62132547_62159467_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62132547 - 62159467
Intron Length:
26921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTGCTTTAATA
Flanking Amino Acid:
SKIHPLENGEIHTSLINGRP
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
80
0.75
1
78.6
31
Major PPT
81
0.7
0.9
77.7
36
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
73
0.72
1.3
77.18
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308