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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62162003_62164322_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62162003 - 62164322
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGACCAAT
5'SS Class:
weak_major
3'SS Sequence:
ATCCATCTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
GHAKACPLDPCEHNTCGETC
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.2
59
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.9
0.36
1
58.2
42.3
Minor 5ss
43.3
-0.7
3
62.7
42.9
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041524
62110286 - 62273607
163322