About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62162012_62164307_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62162012 - 62164307
Intron Length:
2296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TCTTTTAAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
KACPLDPVTNKSICQCEHNT
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71
0.47
1
72.3
36.8
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308
ENSAPLT00000047456
62110304 - 62327611
217308