About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62182353_62223155_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62182353 - 62223155
Intron Length:
40803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTCTCCACA
Flanking Amino Acid:
SAPSSYLGNKVTAAGGLLKF
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
61.2
0.35
2
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308