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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62223258_62223604_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62223258 - 62223604
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TGGCTCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTGTATGTAAAT
Flanking Amino Acid:
LMVQSDVIIEGRDLKISTPK
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.9
0.36
1
58.2
43.1
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
48.7
-0
2.2
73.84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034236
62110168 - 62277304
167137