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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62234468_62240987_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62234468 - 62240987
Intron Length:
6520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATTGTGAATT
Flanking Amino Acid:
MCDDITGECLDCKHNTGGSY
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
81.4
30.6
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.9
78
34.9
Minor 5ss
37.4
-1.4
3.3
49.4
41.4
Minor BPS
49.3
0.02
2.1
70.52
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308