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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62241116_62247269_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62241116 - 62247269
Intron Length:
6154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ATCAACAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
ATATCAACAATA
Flanking Amino Acid:
CACPLNIPSNNFSPTCHFDR
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.5
27.4
Major BPS
70.2
0.5
1
72.1
33
Major PPT
60.5
0.24
1
51.7
41
Minor 5ss
41.3
-1
3.1
56.6
42
Minor BPS
46.5
-0.2
2
61.8
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012467
62110304 - 62327611
217308
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137