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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62262980_62267039_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62262980 - 62267039
Intron Length:
4060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
GTCTCCCATGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTGCTCTATTT
Flanking Amino Acid:
FYNFEEGGCTPCDCSRFGNN
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
68.6
37.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
61.1
0.25
1.1
61
34.5
Minor 5ss
42.7
-0.8
2.5
50.9
40.3
Minor BPS
47.4
-0.1
2
67.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308
ENSAPLT00000047456
62110304 - 62327611
217308