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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62273575_62275833_F

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62273575 - 62275833
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGAACATGCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTTTGAACA
Flanking Amino Acid:
SEARGLIRVWVTLKPEQMIL
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
53.4
0.08
1
46.7
40.3
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
67.6
0.55
1.4
75.34
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034236
62110168 - 62277304
167137