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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62276014_62276776_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62276014 - 62276776
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TCTTTTTGTACT
Flanking Amino Acid:
RLPEQFEGRKLTAYGGKLKY
Intron Amino Acid Position:
1160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
76.3
0.59
0.9
77.4
36.9
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
54.9
0.24
1.8
75.74
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000034236
62110168 - 62277304
167137
ENSAPLT00000012467
62110304 - 62327611
217308