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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62276966_62277061_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62276966 - 62277061
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATTATAGAATT
Flanking Amino Acid:
LTRHEIEMTEHEWEYYGDDQ
Intron Amino Acid Position:
1223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
80
0.75
1
78.6
31
Major PPT
84.4
0.77
0.8
81.2
36.5
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
46.9
-0.1
1.8
66.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000012467
62110304 - 62327611
217308