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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62286981_62290582_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62286981 - 62290582
Intron Length:
3602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
GCTTTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
CACPLSISSNNFSPSCVVEG
Intron Amino Acid Position:
1415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000012467
62110304 - 62327611
217308