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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62312291_62316699_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62312291 - 62316699
Intron Length:
4409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TCTCAGTTACCT
Flanking Amino Acid:
FQERIAQDELKNAEDLLNKV
Intron Amino Acid Position:
1681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.3
0.68
0.9
74.5
39.5
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
46
-0.2
2.4
70.09
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000012467
62110304 - 62327611
217308
ENSAPLT00000047456
62110304 - 62327611
217308