Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62316911_62318474_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62316911 - 62318474

Intron Length:

1564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

ACACATCCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTGTGAACA

Flanking Amino Acid:

INQKNMTMVEKKKQAVEDGR

Intron Amino Acid Position:

1752

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

62.8

0.29

0.9

55.4

35.2

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

60.6

0.33

2.2

79.77

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011890

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047456

62110304 - 62327611

217308

ENSAPLT00000045348

62110304 - 62327611

217308

ENSAPLT00000012467

62110304 - 62327611

217308