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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62318586_62319714_F

Intron Information:

Intron Rank:
39
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62318586 - 62319714
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAAGGTG
5'SS Class:
weak_major
3'SS Sequence:
CATCTTATGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATGT
Flanking Amino Acid:
NNLTNEISLAYVEGVADKIQ
Intron Amino Acid Position:
1789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.1
50.5
40.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70.8
0.47
1
69.9
39.9
Minor 5ss
29.7
-2.3
3.8
46.6
48.8
Minor BPS
60.2
0.4
1.9
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011890
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047456
62110304 - 62327611
217308
ENSAPLT00000045348
62110304 - 62327611
217308
ENSAPLT00000012467
62110304 - 62327611
217308