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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62357568_62361956_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62357568 - 62361956
Intron Length:
4389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
FVGGLTGKIKKSDAVRVTTF
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034152
62357400 - 62398952
41553
ENSAPLT00000026531
62357400 - 62398952
41553