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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62365084_62366083_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62365084 - 62366083
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTTCATTAACA
Flanking Amino Acid:
LIMYLATEDLKDFMSVELSD
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.2
0.64
0.9
73.8
34.5
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
77.1
0.85
1.5
84.69
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034152
62357400 - 62398952
41553
ENSAPLT00000026531
62357400 - 62398952
41553