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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62368213_62369833_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62368213 - 62369833
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGG
5'SS Class:
major
3'SS Sequence:
TCTCTCATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTATTT
Flanking Amino Acid:
FGGLPTLRNLSMKARPEVNL
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
63.4
43.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.7
0.53
0.8
66.4
34.3
Minor 5ss
42.9
-0.8
2.9
56.6
47.5
Minor BPS
52.4
0.15
2.2
80.9
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026531
62357400 - 62398952
41553