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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62383320_62386122_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62383320 - 62386122
Intron Length:
2803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CACTGCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATGTTATTCACT
Flanking Amino Acid:
PPTPSLASALDPLATEMKSA
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
72.2
0.5
0.9
68.6
36.9
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
52.5
0.16
2
74.93
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034152
62357400 - 62398952
41553