About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62388607_62390187_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62388607 - 62390187
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTGT
5'SS Class:
major
3'SS Sequence:
GTTTGATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTGCATC
Flanking Amino Acid:
VAFDDTKVKNRLTIEFEIRT
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.3
40
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.5
0.71
0.9
77.7
40.6
Minor 5ss
40.2
-1.1
3.2
58.8
45.7
Minor BPS
51.4
0.03
1.8
70.08
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034152
62357400 - 62398952
41553
ENSAPLT00000026531
62357400 - 62398952
41553