Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62393013_62395886_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62393013 - 62395886

Intron Length:

2874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGCACA

5'SS Class:

strong_major

3'SS Sequence:

ATATTGAATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TTTGTTTGAAAT

Flanking Amino Acid:

INYTTRRIGPVTYSIDGCIR

Intron Amino Acid Position:

699

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

71.9

39.6

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

66.9

0.38

1.1

60.2

44.3

Minor 5ss

40.1

-1.1

2.8

45.2

Minor BPS

57.2

0.3

1.6

77.37

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026531

62357400 - 62398952

41553

ENSAPLT00000034152

62357400 - 62398952

41553