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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62396041_62396405_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62396041 - 62396405
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAAAC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTCTTCATTT
Flanking Amino Acid:
YFDGTGFAKTVGAYRVGTDL
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
66
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.3
0.59
1
75.7
33.2
Minor 5ss
37.9
-1.4
3.2
51.4
45.5
Minor BPS
55.8
0.26
1.8
75.55
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026531
62357400 - 62398952
41553
ENSAPLT00000034152
62357400 - 62398952
41553