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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62396537_62397050_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62396537 - 62397050
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCATGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
AATACCTCACTT
Flanking Amino Acid:
GLGIELVDGKVMFHVDNGAG
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80.2
0.68
0.9
76.9
37
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
49.7
0.06
1.8
68.92
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019398
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026531
62357400 - 62398952
41553
ENSAPLT00000034152
62357400 - 62398952
41553