Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62397274_62398794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62397274 - 62398794

Intron Length:

1521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCCCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

ACTTATCTAATT

Flanking Amino Acid:

NDPVFVGGYPDGVTQFGLTT

Intron Amino Acid Position:

868

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

83.5

Major BPS

85.7

0.89

0.8

22.2

Major PPT

83.1

0.74

0.7

81.4

23.6

Minor 5ss

45.5

-0.5

2.9

63.6

Minor BPS

52.4

0.15

1.8

71.77

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034152

62357400 - 62398952

41553

ENSAPLT00000026531

62357400 - 62398952

41553