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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62446900_62449135_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62446900 - 62449135
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGTGCTACAAAT
Flanking Amino Acid:
KGGGGDTLPLNFRLPKDKTG
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.1
35.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
79.4
0.66
0.8
77.1
31.6
Minor 5ss
43.8
-0.7
3
58
42
Minor BPS
46.1
-0.2
2
67.38
43

Associated Gene:

Gene:
ARHGAP18
Ensembl Gene ID:
ENSAPLG00000011409
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041692
62426414 - 62515766
89353
ENSAPLT00000011937
62426414 - 62488607
62194