Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62460961_62488359_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62460961 - 62488359

Intron Length:

27399

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCGGC

5'SS Class:

major

3'SS Sequence:

TTAATGTTAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTCTGTTTAATG

Flanking Amino Acid:

HPSGGGGAPGGRRSGQYTMN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

57.5

42.3

Major BPS

81.8

0.79

1.1

34.5

Major PPT

66.9

0.38

62.5

42.9

Minor 5ss

30.8

-2.2

3.3

32.5

42.6

Minor BPS

0.21

1.8

66.31

42.6

Associated Gene:

Gene:

ARHGAP18

Ensembl Gene ID:

ENSAPLG00000011409

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011937

62426414 - 62488607

62194