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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62460961_62515019_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62460961 - 62515019
Intron Length:
54059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TTAATGTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTGTTTAATG
Flanking Amino Acid:
VTKLVHYLHLSRRSGQYTMN
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
36.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
66.9
0.38
1
62.5
42.9
Minor 5ss
29.4
-2.4
3.6
41.9
45.1
Minor BPS
61
0.21
1.8
66.31
42.6

Associated Gene:

Gene:
ARHGAP18
Ensembl Gene ID:
ENSAPLG00000011409
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041692
62426414 - 62515766
89353