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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62524382_62525247_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62524382 - 62525247
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AAATACAAAACA
Flanking Amino Acid:
PLMLHWWLALGSGVISMICG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
45.9
-0.3
2
58.43
40.2

Associated Gene:

Gene:
TMEM244
Ensembl Gene ID:
ENSAPLG00000020682
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026515
62524026 - 62526430
2405