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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62525293_62526198_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62525293 - 62526198
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGTTTAAAAACT
Flanking Amino Acid:
TVIHIIITSVVMSEFPLMLH
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
89.9
0.9
0.6
84.8
22.8
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
47.9
-0
2.1
74.65
41.7

Associated Gene:

Gene:
TMEM244
Ensembl Gene ID:
ENSAPLG00000020682
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026515
62524026 - 62526430
2405