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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62573239_62586600_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62573239 - 62586600
Intron Length:
13362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
IGTLPGSDLKFRVNEFGALE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035023
62571714 - 62648730
77017
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649