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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62586713_62588664_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62586713 - 62588664
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTAA
5'SS Class:
major
3'SS Sequence:
TTTCATTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTTTTTCATT
Flanking Amino Acid:
TTWMVPTAQEAFSEKTGIPT
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
71.1
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81.2
0.7
0.9
76.8
37
Minor 5ss
38.6
-1.3
2.9
47.2
48.2
Minor BPS
56.7
0.29
1.7
72.81
39.3

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649
ENSAPLT00000035023
62571714 - 62648730
77017