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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62591982_62594239_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62591982 - 62594239
Intron Length:
2258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAG
U12 Branch Point Sequence:
GTTTAGAGAATT
Flanking Amino Acid:
RKGEITVLKQTVHSKGKQAW
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
77.7
33.3
Major BPS
55.2
0.13
1.6
60.7
45.9
Major PPT
78
0.63
0.8
72.7
31.7
Minor 5ss
41.3
-1
2.8
49.5
41.1
Minor BPS
42.7
-0.4
2.4
67.93
42.5

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035023
62571714 - 62648730
77017
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649