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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62605037_62605637_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62605037 - 62605637
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTCTCTATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTTTAATT
Flanking Amino Acid:
PKSLFENQNTTVIPSGFRVG
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.8
78.1
29.5
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
69
0.67
1.7
84.32
36.9

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649
ENSAPLT00000035023
62571714 - 62648730
77017