About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62612457_62614709_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62612457 - 62614709
Intron Length:
2253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TCTTTTGTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTTTGCTAATA
Flanking Amino Acid:
EHKRTLITPPDYPHAKHFSW
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.7
0.62
1
72.6
42.4
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
49.2
-0
2.3
69.79
36.8

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035023
62571714 - 62648730
77017
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649