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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62614796_62617062_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62614796 - 62617062
Intron Length:
2267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTCACATAACT
Flanking Amino Acid:
LPAPARAFKVKPSHGFQKNM
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
65.7
0.57
1.8
88.19
35.9

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649
ENSAPLT00000035023
62571714 - 62648730
77017