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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62619081_62624069_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62619081 - 62624069
Intron Length:
4989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
CCCTGACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCCCTGACA
Flanking Amino Acid:
KTGHPLQPPLSPLELVEALE
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.8
32
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
65.4
0.35
1
57.5
36.8
Minor 5ss
31.6
-2.1
3.4
39.8
41.3
Minor BPS
68.1
0.56
1.7
81.48
32.9

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035023
62571714 - 62648730
77017
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649