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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62638120_62644750_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62638120 - 62644750
Intron Length:
6631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTATTACTT
Flanking Amino Acid:
NKLLISNEIKDTEEPNTQRL
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.7
0.53
1.1
74.8
33.8
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
57.1
0.3
1.8
77.76
38.8

Associated Gene:

Gene:
L3MBTL3
Ensembl Gene ID:
ENSAPLG00000011121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035023
62571714 - 62648730
77017
ENSAPLT00000027889
62562629 - 62648277
85649
ENSAPLT00000011615
62562629 - 62648277
85649