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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62652638_62653296_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62652638 - 62653296
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTCAGTACA
5'SS Class:
major
3'SS Sequence:
TTGCCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCCTTTGACA
Flanking Amino Acid:
KQHTEEDILKYMKMTAACLL
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
73.6
37
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
1
72
38
Minor 5ss
33.9
-1.8
2.6
40.4
38
Minor BPS
71
0.65
1.2
75.67
35.6

Associated Gene:

Gene:
SAMD3
Ensembl Gene ID:
ENSAPLG00000011115
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011563
62651992 - 62687362
35371