Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62686538_62687257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62686538 - 62687257

Intron Length:

720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

CTTCACTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

ATCCCCTTCACT

Flanking Amino Acid:

NLEELVPKFREEEVSGAALL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

83.5

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

79.8

0.67

0.8

73.3

31.2

Minor 5ss

45.5

-0.5

2.9

63.6

Minor BPS

65.2

0.56

1.8

79.83

Associated Gene:

Gene:

SAMD3

Ensembl Gene ID:

ENSAPLG00000011115

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029699

62666621 - 62687362

20742

ENSAPLT00000011563

62651992 - 62687362

35371