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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62774750_62778461_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62774750 - 62778461
Intron Length:
3712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAATAT
U12 Branch Point Sequence:
CTTGCATCAATA
Flanking Amino Acid:
MAQYRTMIAT
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.9
38
Major BPS
54.9
0.12
1.2
51.6
42.3
Major PPT
82.8
0.74
0.7
77.2
24.9
Minor 5ss
36.3
-1.6
3
48.6
40.5
Minor BPS
49.6
-0
1.9
64.52
42.2

Associated Gene:

Gene:
TMEM200A
Ensembl Gene ID:
ENSAPLG00000000951
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000932
62774748 - 62779953
5206