About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62869679_62926794_R

Intron Information:

Intron Rank:
145233
Intron Class:
major
Intron Phase:
Intron Coordinates:
62869679 - 62926794
Intron Length:
57116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
85.5
34
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025554
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038042
62868741 - 62926950
58210