About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62907475_62926794_R

Intron Information:

Intron Rank:
145232
Intron Class:
major
Intron Phase:
Intron Coordinates:
62907475 - 62926794
Intron Length:
19320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
TGAGCAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
49.8
0.07
2
72.34
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025554
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022309
62906909 - 62926950
20042