About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62954982_62967268_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62954982 - 62967268
Intron Length:
12287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCC
Flanking Amino Acid:
PQLELTQDGKSSHETLDIVE
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
84.4
0.77
0.9
80.6
37
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
69
0.58
1.8
82.93
36.8

Associated Gene:

Gene:
EPB41L2
Ensembl Gene ID:
ENSAPLG00000011001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022031
62947922 - 63005493
57572
ENSAPLT00000011481
62947922 - 63005493
57572