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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_62979185_62980528_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62979185 - 62980528
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCCCATTC
Flanking Amino Acid:
DPSQLTEDITRYFLCLQLRQ
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
43.2
-0.5
2
56.09
42.4

Associated Gene:

Gene:
EPB41L2
Ensembl Gene ID:
ENSAPLG00000011001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022031
62947922 - 63005493
57572
ENSAPLT00000011481
62947922 - 63005493
57572