Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63091828_63105636_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

63091828 - 63105636

Intron Length:

13809

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCCCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTATAT

U12 Branch Point Sequence:

TCCTCTATATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.3

28.7

Major BPS

66.7

0.41

1.1

63.2

42.8

Major PPT

84.3

0.77

0.7

81.4

23.6

Minor 5ss

32.1

-2

39.7

45.8

Minor BPS

49.3

0.03

1.9

67.91

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011440

63088535 - 63164168

75634