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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63105750_63116699_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63105750 - 63116699
Intron Length:
10950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGATATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTATTGATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
68.2
0.41
1.1
67.8
41.8
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
58.7
0.27
1.6
72.51
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010992
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011440
63088535 - 63164168
75634