About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63268417_63291313_R


Intron Information:

Intron Rank:
146557

Intron Class:
major

Intron Phase:

Intron Coordinates:
63268417 - 63291313

Intron Length:
22897

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGTGTGTG

5'SS Class:
strong_major

3'SS Sequence:
CCTGAGACTTCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTCAT

U12 Branch Point Sequence:
TTCTCATTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.6
0.79
0.9
74
36.6

Major BPS
94.9
1.12
0.6
93.9
14.7

Major PPT
64.7
0.33
1
58.7
41.6

Minor 5ss
36.9
-1.5
3.2
48.2
47.9

Minor BPS
58.9
0.36
2
80.74
41.5

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

63268309 - 63292429
24121