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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63293049_63301852_F

Intron Information:

Intron Rank:
147986
Intron Class:
major
Intron Phase:
Intron Coordinates:
63293049 - 63301852
Intron Length:
8804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029675
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019654
63292180 - 63302724
10545