About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63345966_63381740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63345966 - 63381740
Intron Length:
35775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATACTT
5'SS Class:
major
3'SS Sequence:
ACTGTTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTCTGATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.3
42.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65
0.34
1
57.9
42.6
Minor 5ss
37.5
-1.4
3.3
49.3
46.3
Minor BPS
57.1
0.3
1.7
75.98
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026000
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025494
63345759 - 63424944
79186